PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016440259.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 361aa    MW: 37902.2 Da    PI: 11.4126
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016440259.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000141840123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C +C k Fs++  L  H+ +H
  XP_016440259.1 18 YRCDNCRKLFSSSQALAGHQHLH 40
                    9*******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.14E-51743No hitNo description
Gene3DG3DSA:3.30.160.609.3E-41840IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.7831845IPR007087Zinc finger, C2H2
PROSITE patternPS0002802040IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAHEPHNHKI TGQGIVVYRC DNCRKLFSSS QALAGHQHLH KVQGTWVKGH HHKFLLPPDY  60
LPDLNRFIAR NNKSITVRIG GRGKPIVQEP LAVAPAPALA TPLLAQAPAS APIGPRHGRP  120
QSVIQPQPTV QVPLAAALAT ATPLLAQASP LPLAVAPAPA PAPAPAPAPA TPLLAQSLAL  180
PLAAASSAAT PLLAQAPAQA LPLAVAPALA TPLLAQAPTL VARRRGKPRS IIRPQPMVQA  240
PLATAPAPAT PLLVQAPAPV ARPRGRPRSI IRSQPMVQVP LAASPTPATP LLVQGPDPIA  300
RLENQLALYQ NRLNYFKVVA ARREESTHSS TGSTSTITAD KTNGKKKVEE EVEELDLELR  360
L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016440259.10.0PREDICTED: vegetative cell wall protein gp1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6643821